• Home page: RStudio integrated development environment (IDE)

Available versions:

Connect to the Graphical User Interface server using Remote Desktop Protocol (RDP) and open a terminal or, preferably, connect to the Text-based User Interface and request access to a compute node with srun:

srun --nodes=1 --ntasks-per-node=4 --partition=cpu --qos=cpu --time=0-03:00:00 --x11 --pty bash

Load the module for the version of R you intend to use:

module load gnu8 R

Load the rstudio module:

module load rstudio

Starting rstudio:

rstudio

Using Python with the RStudio IDE

Usage example with the scipy virtualenv:

[sti.calcoloo@ui01 ~]$ srun --nodes=1 --ntasks-per-node=4 --partition=cpu --qos=cpu --time=0-03:00:00 --x11 --pty bash
[sti.calcolo@wn15 ~]$ module load gnu7 R rstudio
[sti.calcolo@wn15 ~]$ module load python/3.7.2
[sti.calcolo@wn15 ~]$ source "/hpc/share/tools/python/3.7.2/virtualenv/scipy/bin/activate"
(scipy) [sti.calcolo@wn15 ~]$ rstudio

Usage example with the scipy condaenv:

[sti.calcolo@ui01 ~]$ srun --nodes=1 --ntasks-per-node=4 --partition=cpu --qos=cpu --time=0-03:00:00 --x11 --pty bash
[sti.calcolo@wn15 ~]$ module load gnu8 R rstudio
[sti.calcolo@wn15 ~]$ module load miniconda3
[sti.calcolo@wn15 ~]$ source "$CONDA_PREFIX/etc/profile.d/conda.sh"
[sti.calcolo@wn15 ~]$ conda activate scipy
(scipy) [sti.calcolo@wn15 ~]$ rstudio