Software List []

Questa è una vecchia versione del documento!

Environment Software (libraries): Library

Environment Software ( compilers, Debuggers, Profilers): Compilers, Debuggers, Profilers

Application/tools (Chemistry) Chemistry

Application/tools (Physics) Physics

Application/tools (Life Science) Life Science

Application/tools ( Engineering) Engineering

Application/tools ( Bioinformatics) Bioinformatics

Application/tools ( Miscellanous) Miscellanous

Name	Version	Installation	Module	note
APPLICATIONS / TOOLS
Crystal14	1.04	/hpc/share	crystal14/1.0.4 (todo)
Matlab	R2011a	/hpc/share	matlab/R2011a
Matlab	R2017a	/hpc/share	matlab/R2017a (default)
FSDA		/hpc/share	toolkit di matlab/R2017a	http://www.riani.it/MATLAB/FSDA/index.html
Octave	3.8.2	rpm	no	https://www.gnu.org/software/octave/
R	3.3.3	module	gnu R_base/3.3.2	https://www.r-project.org/
QE	5.4.0	rpm	no	http://www.quantum-espresso.org/
Gromacs	4.5.7, 5.1.4	/hpc/share	no	http://www.gromacs.org/
Gaussian	09, 16	/hpc/share		http://gaussian.com/
Amber	11	/hpc/share		http://ambermd.org/
Schrodinger	2017	/hpc/share
Abaqus	2017, 2018	/hpc/share		https://en.wikipedia.org/wiki/Abaqus
Emboss	6.6.0	/hpc/share		http://emboss.sourgeforge.net
Itpp	4.4.1	/hpc/share		http://itpp.sourceforge.net
AutoDock	4.2.6	/hpc/share
fds	6.5.3	/hpc/share		https://github.com/firemodels/fds/wiki
sentaurus	2017.09	/hpc/share	sentaurus
Samtools	1.6	/hpc/share		http://www.htslib.org/
Star	2.5.3a	/hpc/share		https://github.com/alexdobin/STAR
Bedtools	2.25.0	/hpc/share		http://bedtools.readthedocs.io/en/latest/
Bowtie	1.2.2	/hpc/share		http://bowtie-bio.sourceforge.net/index.shtml
Bowtie2	2.3.3.1	/hpc/share		http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
tensorflow-gpu		module	python/3.6.3 cuda gnu	https://www.tensorflow.org
keras		module	python/3.6.3 cuda gnu	https://keras.io/
qiime		virtualenv		http://qiime.org/
flash		module
prinseq		module
espresso md		virtualenv		http://espressomd.org/wordpress/
namd		module		http://www.ks.uiuc.edu/Research/namd/
plumed		module		http://www.plumed.org/
mpi4py		rpm ohpc