calcoloscientifico:softwareapplicativonew1:lifesci []

Name	Version	Installation	Module	note
APPLICATIONS/TOOLS
Crystal14	1.04	/hpc/share	crystal14/1.0.4 (todo)
R	3.3.3	module	gnu R_base/3.3.2	https://www.r-project.org
Gromacs	4.5.7, 5.1.4	/hpc/share	no	http://www.gromacs.org
Amber	11	/hpc/share		http://ambermd.org
AutoDock	4.2.6	/hpc/share
Samtools	1.6	/hpc/share		http://www.htslib.org
Star	2.5.3a	/hpc/share		https://github.com/alexdobin/STAR
Bedtools	2.25.0	/hpc/share		http://bedtools.readthedocs.io/en/latest
Bowtie	1.2.2	/hpc/share		http://bowtie-bio.sourceforge.net/index.shtml
Bowtie2	2.3.3.1	/hpc/share		http://bowtie-bio..sourceforge.net/bowtie2/index.shtml
espresso md		/hpc/share	virtualenv/espresso	http://espressomd.org/wordpress
namd		/hpc/share		http://www.ks.uiuc.edu/Research/namd
mpi4py		rpm ohpc		https://mpi4py.readthedocs.io/en/stable
SPAdes	3.13.0	/hpc/share	modulefiles/spades	http://cab.spbu.ru/software/spades
Unicycler	0.4.7	/hpc/share	virtualenv/unicycler	https://github.com/rrwick/Unicycler
Prokka	1.13.4	/hpc/share	modulefiles/prokka	https://github.com/tseemann/prokka
ABySS	2.1.15	/hpc/share	moduledeps/gnu-openmpi/abyss	http://www.bcgsc.ca/platform/bioinfo/software/abyss
BLAST+	2.8.1+	/hpc/share	modulefiles/blast	https://blast.ncbi.nlm.nih.gov
barrnap	0.9	/hpc/share	modulefiles/barrnap	https://github.com/tseemann/barrnap
HMMER	3.2.1	/hpc/share	moduledeps/gnu-openmpi/hmmer	http://hmmer.org/documentation.html