calcoloscientifico:softwareapplicativonew1:lifesci []

Questa è una vecchia versione del documento!

Name	Version	Installation	Module	note
APPLICATIONS / TOOLS
Crystal14	1.04	/hpc/share	crystal14/1.0.4 (todo)
R	3.3.3	module	gnu R_base/3.3.2	https://www.r-project.org/
Gromacs	4.5.7, 5.1.4	/hpc/share	no	http://www.gromacs.org/
Amber	11	/hpc/share		http://ambermd.org/
AutoDock	4.2.6	/hpc/share
Samtools	1.6	/hpc/share		http://www.htslib.org/
Star	2.5.3a	/hpc/share		https://github.com/alexdobin/STAR
Bedtools	2.25.0	/hpc/share		http://bedtools.readthedocs.io/en/latest/
Bowtie	1.2.2	/hpc/share		http://bowtie-bio.sourceforge.net/index.shtml
Bowtie2	2.3.3.1	/hpc/share		http://bowtie-bio..sourceforge.net/bowtie2/index.shtml
espresso md		virtualenv		http://espressomd.org/wordpress/
namd		module		http://www.ks.uiuc.edu/Research/namd/
mpi4py		rpm ohpc
SPAdes	3.13.0	/hpc/share		http://cab.spbu.ru/software/spades
Unicycler				https://github.com/rrwick/Unicycler
Prokka				https://github.com/tseemann/prokka
ABySS				http://www.bcgsc.ca/platform/bioinfo/software/abyss
BLAST+
barrnap	0.9			https://github.com/tseemann/barrnap
HMMER	3.2.1			http://hmmer.org/documentation.html