calcoloscientifico:softwareapplicativonew1:lifesci
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| Name | Version | Installation | Module | note |
|---|---|---|---|---|
| APPLICATIONS / TOOLS | ||||
| Crystal14 | 1.04 | /hpc/share | crystal14/1.0.4 (todo) | |
| R | 3.3.3 | module | gnu R_base/3.3.2 | https://www.r-project.org/ |
| Gromacs | 4.5.7, 5.1.4 | /hpc/share | no | http://www.gromacs.org/ |
| Amber | 11 | /hpc/share | http://ambermd.org/ | |
| AutoDock | 4.2.6 | /hpc/share | ||
| Samtools | 1.6 | /hpc/share | http://www.htslib.org/ | |
| Star | 2.5.3a | /hpc/share | https://github.com/alexdobin/STAR | |
| Bedtools | 2.25.0 | /hpc/share | http://bedtools.readthedocs.io/en/latest/ | |
| Bowtie | 1.2.2 | /hpc/share | http://bowtie-bio.sourceforge.net/index.shtml | |
| Bowtie2 | 2.3.3.1 | /hpc/share | http://bowtie-bio..sourceforge.net/bowtie2/index.shtml | |
| espresso md | virtualenv | http://espressomd.org/wordpress/ | ||
| namd | module | http://www.ks.uiuc.edu/Research/namd/ | ||
| mpi4py | rpm ohpc | |||
| SPAdes | ||||
| Unicycler | https://github.com/rrwick/Unicycler | |||
| Prokka | https://github.com/tseemann/prokka | |||
| ABySS | http://www.bcgsc.ca/platform/bioinfo/software/abyss | |||
| BLAST+ | ||||
| barrnap | 0.9 | https://github.com/tseemann/barrnap | ||
| HMMR | 3.2.1 | http://hmmer.org/documentation.html | ||
calcoloscientifico/softwareapplicativonew1/lifesci.1550747532.txt.gz · Ultima modifica: 21/02/2019 12:12 da fausto.pagani