calcoloscientifico:softwareapplicativonew1:bioinf
| Name | Version | Installation | Module | note |
|---|---|---|---|---|
| APPLICATIONS / TOOLS | ||||
| Matlab | R2011a | /hpc/share | matlab/R2011a | |
| Matlab | R2017a | /hpc/share | matlab/R2017a (default) | |
| Octave | 3.8.2 | rpm | no | https://www.gnu.org/software/octave/ |
| R | 3.3.3 | module | gnu R_base/3.3.2 | https://www.r-project.org/ |
| Samtools | 1.6 | /hpc/share | http://www.htslib.org | |
| Star | 2.5.3a | /hpc/share | https://github.com/alexdobin/STAR | |
| Bedtools | 2.25.0 | /hpc/share | http://bedtools.readthedocs.io/en/latest | |
| Bowtie | 1.2.2 | /hpc/share | http://bowtie-bio.sourceforge.net/index.shtml | |
| Bowtie2 | 2.3.3.1 | /hpc/share | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml | |
| qiime | virtualenv | http://qiime.org | ||
| flash | module | |||
| prinseq | module | |||
| espresso md | virtualenv | http://espressomd.org/wordpress | ||
| mpi4py | rpm ohpc | |||
| relion | 3.0.8 | module | https://www3.mrc-lmb.cam.ac.uk/relion | |
| relion | 3.1.1 | module | https://www3.mrc-lmb.cam.ac.uk/relion | |
calcoloscientifico/softwareapplicativonew1/bioinf.txt · Ultima modifica: da fabio.spataro