Differenze

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--- calcoloscientifico:userguide:tools:rstudio [05/07/2023 09:48] – creata fabio.spataro
+++ calcoloscientifico:userguide:tools:rstudio [07/10/2024 20:36] (versione attuale) – [Table] fabio.spataro
@@ Linea 5: / Linea 5: @@
 Available versions:
-^ RStudio      ^
+^ RStudio        ^
 | 2023.06.0+421  |
+| 2023.12.1+402  |
-Connect to the [[calcoloscientifico:userguide:gui|Graphical User Interface]] server using Remote Desktop Protocol (RDP) or, preferably, request access to a compute node with ''srun'':
+Connect to the [[calcoloscientifico:userguide:gui|Graphical User Interface]] server using Remote Desktop Protocol (RDP) and open a terminal or, preferably, connect to the [[calcoloscientifico:userguide#login|Text-based User Interface]] and request access to a compute node with ''srun'':
 <code>
@@ Linea 14: / Linea 15: @@
 </code>
-Load the module for the version of R you intend to use then load the rstudio module:
+Load the module for the version of R you intend to use:
+<code>
+module load gnu8 R
+</code>
+Load the rstudio module:
 <code>
@@ Linea 24: / Linea 31: @@
 <code>
 rstudio
+</code>
+=== Using Python with the RStudio IDE ===
+[[https://support.posit.co/hc/en-us/articles/1500007929061-Using-Python-with-the-RStudio-IDE|Using Python with the RStudio IDE]]
+=== Using a Python virtualenv with RStudio ===
+Usage example with the ''scipy'' virtualenv:
+<code>
+[sti.calcoloo@ui01 ~]$ srun --nodes=1 --ntasks-per-node=4 --partition=cpu --qos=cpu --time=0-03:00:00 --x11 --pty bash
+[sti.calcolo@wn15 ~]$ module load gnu7 R rstudio
+[sti.calcolo@wn15 ~]$ module load python/3.7.2
+[sti.calcolo@wn15 ~]$ source "/hpc/share/tools/python/3.7.2/virtualenv/scipy/bin/activate"
+(scipy) [sti.calcolo@wn15 ~]$ rstudio
+</code>
+=== Using a Python condaenv with RStudio ===
+Usage example with the ''scipy'' condaenv:
+<code>
+[sti.calcolo@ui01 ~]$ srun --nodes=1 --ntasks-per-node=4 --partition=cpu --qos=cpu --time=0-03:00:00 --x11 --pty bash
+[sti.calcolo@wn15 ~]$ module load gnu8 R rstudio
+[sti.calcolo@wn15 ~]$ module load miniconda3
+[sti.calcolo@wn15 ~]$ source "$CONDA_PREFIX/etc/profile.d/conda.sh"
+[sti.calcolo@wn15 ~]$ conda activate scipy
+(scipy) [sti.calcolo@wn15 ~]$ rstudio
 </code>