- calcoloscientifico:cluster:softwareapplicativo

Conda

Anonymous (anonymous@undisclosed.example.com) — 2024-07-05T08:04:29+00:00

Conda Conda is an open source, cross-platform, language-agnostic package manager and environment management system. It is released under the Berkeley Software Distribution License by Continuum Analytics. Conda allows users to easily install different versions of binary software packages and any required libraries appropriate for their computing platform. Also, it allows users to switch between package versions and download and install updates from a software repository.

CONDA user defined environments

Anonymous (anonymous@undisclosed.example.com) — 2026-02-25T14:08:29+00:00

CONDA user defined environments Users or groups can build their own environments. General template General template that can be used to create personal or group environments: #!/bin/bash set -e module load miniconda3 source "$CONDA_PREFIX/etc/profile.d/conda.sh" CONDAENV_NAME='template' CONDAENV_VERSION=$(date '+%Y.%m.%d') PYTHON_VERSION='3.9' CONDAENV="${CONDAENV_NAME}-${CONDAENV_VERSION}" if [ $UID = 0 ]; then CONDAENV_PREFIX="/hpc/share/tools/miniconda3/envs/$CONDAENV" COND…

Job Echidna

Anonymous (anonymous@undisclosed.example.com) — 2020-04-11T22:18:14+00:00

Job Echidna Echidna Mixed Models Software Echidna Mixed Models Software (EchidnaMMS) performs statistical analysis by fitting linear mixed models utilising the Average Information algorithm to estimate variance parameters. Echidna is targeted for use in animal and plant breeding contexts.

FDS

Anonymous (anonymous@undisclosed.example.com) — 2020-05-24T14:38:45+00:00

FDS FDS-SMV Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. Smokeview (SMV) is a visualization program used to display the output of FDS and CFAST simulations.

Gaussview 6.1.1

Anonymous (anonymous@undisclosed.example.com) — 2020-05-18T13:32:22+00:00

Gaussview 6.1.1 2019 inside university network: ssh -X nome.cognome@gui.hpc.unipr.it or remote desktop: gui.hpc.unipr.it (and then you can use a terminal) otherwise if you are outsite of university network, you have to use vpn: and then, at the end:

ORCA

Anonymous (anonymous@undisclosed.example.com) — 2026-01-11T22:14:15+00:00

ORCA * Home page: * Licenza: End User License Agreement (EULA) for the ORCA software * Richiesto da: prof.ssa Anna Painelli * Data richiesta: 31/10/2018 * Usato da: G_MMM (prof.ssa Anna Painelli) Several versions of ORCA are available: ORCA

Relion

Anonymous (anonymous@undisclosed.example.com) — 2023-05-29T09:55:39+00:00

Relion Short guide to using Relion (compiled with GNU tools) Connect to the server gui.hpc.unipr.it using: ssh -X nome.cognome@gui.hpc.unipr.it (with linux) or mobaXterm o Remote Desktop (with windows) Open a terminal and enter the following commands: [user@ui03 ~]$ newgrp newgrp: group '' ()[user@ui03 ~]$ cd $GROUP ()[user@ui03 ]$ cd $USER ()[user@ui03 ]$ mkdir -p relion/test ()[user@ui03 ]$ cd relion/test ()[us…