^  Name  ^  Version  ^  Installation  ^  Module  ^ note ^
^  All APPLICATIONS / TOOLS  ^^^^^
| [[..:priv:cluster:softwareapplicativo:Crystal14 ]]  | 1.04           | /hpc/share | crystal14/1.0.4 (todo) |  
| Matlab     | R2011a   | /hpc/share   | matlab/R2011a  |
| Matlab     | R2017a   | /hpc/share   | matlab/R2017a (default)  |
| FSDA       | | /hpc/share | toolkit di matlab/R2017a | http://www.riani.it/MATLAB/FSDA/index.html|
| Octave    | 3.8.2   | rpm        | no    | https://www.gnu.org/software/octave/  |
| [[..:priv:cluster:softwareapplicativo:R]]       | 3.3.3   | module     |  gnu R_base/3.3.2  | https://www.r-project.org/  |
| [[..:priv:cluster:softwareapplicativo:QE]]        | 5.4.0  | rpm  | no | http://www.quantum-espresso.org/    |
| [[..:priv:cluster:softwareapplicativo:Gromacs ]]  | 4.5.7, 5.1.4 | /hpc/share  | no  | http://www.gromacs.org/ |
| [[..:priv:cluster:softwareapplicativo:Gaussian ]]  | 09, 16  | /hpc/share |  | http://gaussian.com/   |
| [[..:priv:cluster:softwareapplicativo:Amber ]]  | 11  | /hpc/share |  | http://ambermd.org/ |
| [[..:priv:cluster:softwareapplicativo:Schrodinger ]]  | 2017 | /hpc/share |  |   |
| [[..:priv:cluster:softwareapplicativo:Abaqus ]]  | 2017, 2018  | /hpc/share |  | https://en.wikipedia.org/wiki/Abaqus |
| [[..:priv:cluster:softwareapplicativo:Emboss ]]  | 6.6.0  | /hpc/share |  | http://emboss.sourgeforge.net  |
| [[..:priv:cluster:softwareapplicativo:Itpp ]]  | 4.4.1  | /hpc/share |  | http://itpp.sourceforge.net  |
| [[..:priv:cluster:softwareapplicativo:AutoDock ]]  | 4.2.6 | /hpc/share  |    |
| [[..:priv:cluster:softwareapplicativo:fds ]] | 6.5.3 | /hpc/share | | https://github.com/firemodels/fds/wiki |
| [[..:priv:cluster:softwareapplicativo:sentaurus ]] | 2017.09 | /hpc/share | sentaurus| |
| [[..:priv:cluster:softwareapplicativo: Samtools]] | 1.6 | /hpc/share | |http://www.htslib.org/ |
| [[..:priv:cluster:softwareapplicativo: Star]] | 2.5.3a | /hpc/share | |https://github.com/alexdobin/STAR |
| [[..:priv:cluster:softwareapplicativo: Bedtools ]] | 2.25.0 | /hpc/share | | http://bedtools.readthedocs.io/en/latest/ |
| [[..:priv:cluster:softwareapplicativo: Bowtie ]] | 1.2.2 | /hpc/share | | http://bowtie-bio.sourceforge.net/index.shtml |
| [[..:priv:cluster:softwareapplicativo: Bowtie2 ]] | 2.3.3.1 | /hpc/share | | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
| [[..:priv:cluster:softwareapplicativo: tensorflow-gpu ]] |  | module | python/3.6.3 cuda gnu | https://www.tensorflow.org |
| [[..:priv:cluster:softwareapplicativo: keras ]] |  | module |python/3.6.3 cuda gnu| https://keras.io/ |
| [[..:priv:cluster:softwareapplicativo: qiime ]] |  | virtualenv  | | http://qiime.org/ |
| [[..:priv:cluster:softwareapplicativo: flash ]] |  | module | | |
| [[..:priv:cluster:softwareapplicativo: prinseq ]] |  | module | |  |
| [[..:priv:cluster:softwareapplicativo: espresso md ]] |  | virtualenv | | http://espressomd.org/wordpress/|
| [[..:priv:cluster:softwareapplicativo: namd ]] |  | module  | | http://www.ks.uiuc.edu/Research/namd/|
| [[..:priv:cluster:softwareapplicativo: plumed ]] |  | module  | | http://www.plumed.org/|
| [[..:priv:cluster:softwareapplicativo: mpi4py ]] |  | rpm ohpc  | | |