^ Name ^ Version  ^  Installation ^ Module ^ note ^
^  APPLICATIONS/TOOLS  ^^^^^
| [[..:priv:cluster:softwareapplicativo:Crystal14]] | 1.04 | /hpc/share | crystal14/1.0.4 (todo) |
| [[..:priv:cluster:softwareapplicativo:R]] | 3.3.3 | module | gnu R_base/3.3.2 | https://www.r-project.org |
| [[..:priv:cluster:softwareapplicativo:Gromacs]] | 4.5.7, 5.1.4 | /hpc/share | no | http://www.gromacs.org |
| [[..:priv:cluster:softwareapplicativo:Amber]] | 11 | /hpc/share | | http://ambermd.org |
| [[..:priv:cluster:softwareapplicativo:AutoDock]] | 4.2.6 | /hpc/share | | |
| [[..:priv:cluster:softwareapplicativo:Samtools]] | 1.6 | /hpc/share | | http://www.htslib.org |
| [[..:priv:cluster:softwareapplicativo:Star]] | 2.5.3a | /hpc/share | | https://github.com/alexdobin/STAR |
| [[..:priv:cluster:softwareapplicativo:Bedtools]] | 2.25.0 | /hpc/share | | http://bedtools.readthedocs.io/en/latest |
| [[..:priv:cluster:softwareapplicativo:Bowtie]] | 1.2.2 | /hpc/share | | http://bowtie-bio.sourceforge.net/index.shtml |
| [[..:priv:cluster:softwareapplicativo:Bowtie2]] | 2.3.3.1 | /hpc/share | | http://bowtie-bio..sourceforge.net/bowtie2/index.shtml |
| [[..:priv:cluster:softwareapplicativo:espresso md]] | | /hpc/share | virtualenv/espresso | http://espressomd.org/wordpress |
| [[..:priv:cluster:softwareapplicativo:namd]] | | /hpc/share | | http://www.ks.uiuc.edu/Research/namd |
| [[..:priv:cluster:softwareapplicativo:mpi4py]] | | rpm ohpc | | https://mpi4py.readthedocs.io/en/stable |
| [[..:priv:cluster:softwareapplicativo:SPAdes]] | 3.13.0 | /hpc/share | modulefiles/spades | http://cab.spbu.ru/software/spades |
| [[..:priv:cluster:softwareapplicativo:Unicycler]] | 0.4.7 | /hpc/share | virtualenv/unicycler | https://github.com/rrwick/Unicycler |
| [[..:priv:cluster:softwareapplicativo:Prokka]] | 1.13.4 | /hpc/share | modulefiles/prokka | https://github.com/tseemann/prokka |
| [[..:priv:cluster:softwareapplicativo:ABySS]] | 2.1.15 | /hpc/share | moduledeps/gnu-openmpi/abyss | http://www.bcgsc.ca/platform/bioinfo/software/abyss |
| [[..:priv:cluster:softwareapplicativo:BLAST+]] | 2.8.1+ | /hpc/share | modulefiles/blast | https://blast.ncbi.nlm.nih.gov |
| [[..:priv:cluster:softwareapplicativo:barrnap]] | 0.9 | /hpc/share | modulefiles/barrnap | https://github.com/tseemann/barrnap |
| [[..:priv:cluster:softwareapplicativo:HMMER]] | 3.2.1 | /hpc/share | moduledeps/gnu-openmpi/hmmer | http://hmmer.org/documentation.html |