#!/bin/bash
#SBATCH --job-name=cryolo
#SBATCH --output=%x.o%j
#SBATCH --error=%x.e%j
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=1
#SBATCH --mem=1G
#SBATCH --partition=vrt
#SBATCH --time=0-01:00:00
##SBATCH --account=<account>

module load miniconda3

source "$CONDA_PREFIX/etc/profile.d/conda.sh"

conda activate cryolo-cpu

cryolo_gui.py config config_cryolo.json 220 \
--filter LOWPASS \
--low_pass_cutoff 0.1 \
--num_cpu ${SLURM_NTASKS_PER_NODE:-1}

conda deactivate