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--- calcoloscientifico:userguide:nextflow [30/05/2025 19:53] – [Table] fabio.spataro
+++ calcoloscientifico:userguide:nextflow [04/08/2026 16:05] (versione attuale) – fabio.spataro
@@ Linea 10: / Linea 10: @@
 | 24.04.4   |
 | 25.04.2   |
+| 26.04.6   |
 === Job Nextflow ===
@@ Linea 31: / Linea 32: @@
 shopt -q login_shell || exit 1
-module load nextflow/23.10.0
+module load nextflow/26.04.6
 # chipseq
@@ Linea 37: / Linea 38: @@
     -r 2.0.0 \
     -profile test,singularity \
-    -with-singularity "$CONTAINER" \
+    -with-singularity "$NXF_CONTAINER" \
     --outdir "${SLURM_JOB_NAME}.${SLURM_JOB_ID}"
+</code>
+In the event of errors occurring only with version 26.04.6 and the ''nf-core/sarek'' pipeline, it may be necessary to define the following environment variable:
+<code>
+export NXF_SYNTAX_PARSER="v1"
 </code>