Differenze

Queste sono le differenze tra la revisione selezionata e la versione attuale della pagina.

--- calcoloscientifico:userguide:nextflow [01/10/2024 11:03] – fabio.spataro
+++ calcoloscientifico:userguide:nextflow [04/08/2026 16:05] (versione attuale) – fabio.spataro
@@ Linea 9: / Linea 9: @@
 | 23.10.0   |
 | 24.04.4   |
+| 25.04.2   |
+| 26.04.6   |
 === Job Nextflow ===
@@ Linea 30: / Linea 32: @@
 shopt -q login_shell || exit 1
-module load nextflow/23.10.0
+module load nextflow/26.04.6
 # chipseq
@@ Linea 36: / Linea 38: @@
     -r 2.0.0 \
     -profile test,singularity \
-    -with-singularity "$CONTAINER" \
+    -with-singularity "$NXF_CONTAINER" \
     --outdir "${SLURM_JOB_NAME}.${SLURM_JOB_ID}"
+</code>
+In the event of errors occurring only with version 26.04.6 and the ''nf-core/sarek'' pipeline, it may be necessary to define the following environment variable:
+<code>
+export NXF_SYNTAX_PARSER="v1"
 </code>