calcoloscientifico:userguide:dalton
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| Entrambe le parti precedenti la revisioneRevisione precedenteProssima revisione | Revisione precedente | ||
| calcoloscientifico:userguide:dalton [01/09/2023 16:25] – [Job LSDalton CPU MPI OpenMP] fabio.spataro | calcoloscientifico:userguide:dalton [03/09/2023 10:41] (versione attuale) – fabio.spataro | ||
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| - | ===== Dalton/ | + | ===== Dalton ===== |
| - | [[https:// | + | The kernel of the Dalton suite is the two powerful molecular electronic structure programs, **Dalton** and **LSDalton**: |
| + | |||
| + | [[https:// | ||
| + | |||
| + | ==== Dalton examples ==== | ||
| + | |||
| + | === Dalton 2020.1 === | ||
| + | |||
| + | [[https:// | ||
| + | |||
| + | ==== Job Dalton CPU ==== | ||
| + | |||
| + | === Dalton 2020.1 === | ||
| + | |||
| + | <code bash slurm-dalton-cpu.sh> | ||
| + | #!/bin/bash --login | ||
| + | #SBATCH --job-name=dalton_cpu | ||
| + | #SBATCH --output=%x.o%j | ||
| + | #SBATCH --error=%x.e%j | ||
| + | #SBATCH --nodes=1 | ||
| + | #SBATCH --ntasks-per-node=1 | ||
| + | #SBATCH --time=0-00: | ||
| + | #SBATCH --mem=8G | ||
| + | #SBATCH --partition=vrt | ||
| + | #SBATCH --qos=vrt | ||
| + | #SBATCH --account=< | ||
| + | |||
| + | shopt -q login_shell || exit 1 | ||
| + | test -n " | ||
| + | |||
| + | module load gnu8 | ||
| + | module load openmpi3 | ||
| + | module load dalton/ | ||
| + | |||
| + | dalton tddft_tda.dal H2O_cc-pVDZ.mol | ||
| + | </ | ||
| + | |||
| + | ==== Job Dalton CPU MPI ==== | ||
| + | |||
| + | === Dalton 2020.1 === | ||
| + | |||
| + | <code bash slurm-dalton-cpu-mpi.sh> | ||
| + | #!/bin/bash --login | ||
| + | #SBATCH --job-name=dalton_cpu_mpi | ||
| + | #SBATCH --output=%x.o%j | ||
| + | #SBATCH --error=%x.e%j | ||
| + | #SBATCH --nodes=1 | ||
| + | #SBATCH --ntasks-per-node=16 | ||
| + | #SBATCH --time=0-00: | ||
| + | #SBATCH --mem=8G | ||
| + | #SBATCH --partition=cpu | ||
| + | #SBATCH --qos=cpu | ||
| + | #SBATCH --account=< | ||
| + | |||
| + | shopt -q login_shell || exit 1 | ||
| + | test -n " | ||
| + | |||
| + | module load gnu8 | ||
| + | module load openmpi3 | ||
| + | module load dalton/ | ||
| + | |||
| + | dalton tddft_tda.dal H2O_cc-pVDZ.mol | ||
| + | </ | ||
| + | |||
| + | ===== LSDalton | ||
| + | |||
| + | ==== LSDalton examples ==== | ||
| + | |||
| + | === LSDalton 2020.0 === | ||
| + | |||
| + | [[https:// | ||
| ==== Job LSDalton CPU ==== | ==== Job LSDalton CPU ==== | ||
| Linea 8: | Linea 78: | ||
| <code bash slurm-lsdalton-cpu.sh> | <code bash slurm-lsdalton-cpu.sh> | ||
| - | #!/bin/bash | + | # |
| #SBATCH --job-name=lsdalton_cpu | #SBATCH --job-name=lsdalton_cpu | ||
| #SBATCH --output=%x.o%j | #SBATCH --output=%x.o%j | ||
| Linea 20: | Linea 90: | ||
| #SBATCH --account=< | #SBATCH --account=< | ||
| - | test -n " | + | shopt -q login_shell || exit 1 |
| + | test -n " | ||
| module load gnu8 | module load gnu8 | ||
| Linea 35: | Linea 106: | ||
| <code bash slurm-lsdalton-cpu-omp.sh> | <code bash slurm-lsdalton-cpu-omp.sh> | ||
| - | #!/bin/bash | + | # |
| #SBATCH --job-name=lsdalton_cpu_omp | #SBATCH --job-name=lsdalton_cpu_omp | ||
| #SBATCH --output=%x.o%j | #SBATCH --output=%x.o%j | ||
| Linea 48: | Linea 119: | ||
| #SBATCH --account=< | #SBATCH --account=< | ||
| - | test -n " | + | shopt -q login_shell || exit 1 |
| + | test -n " | ||
| module load gnu8 | module load gnu8 | ||
| Linea 64: | Linea 136: | ||
| <code bash slurm-lsdalton-cpu-mpi.sh> | <code bash slurm-lsdalton-cpu-mpi.sh> | ||
| - | #!/bin/bash | + | # |
| #SBATCH --job-name=lsdalton_cpu_mpi | #SBATCH --job-name=lsdalton_cpu_mpi | ||
| #SBATCH --output=%x.o%j | #SBATCH --output=%x.o%j | ||
| Linea 76: | Linea 148: | ||
| #SBATCH --account=< | #SBATCH --account=< | ||
| - | test -n " | + | shopt -q login_shell || exit 1 |
| + | test -n " | ||
| module load gnu8 | module load gnu8 | ||
| Linea 93: | Linea 166: | ||
| <code bash slurm-lsdalton-cpu-mpi-omp.sh> | <code bash slurm-lsdalton-cpu-mpi-omp.sh> | ||
| - | #!/bin/bash | + | # |
| #SBATCH --job-name=lsdalton_cpu_mpi_omp | #SBATCH --job-name=lsdalton_cpu_mpi_omp | ||
| #SBATCH --output=%x.o%j | #SBATCH --output=%x.o%j | ||
| Linea 105: | Linea 178: | ||
| #SBATCH --account=< | #SBATCH --account=< | ||
| - | test -n " | + | shopt -q login_shell || exit 1 |
| + | test -n " | ||
| module load gnu8 | module load gnu8 | ||
| Linea 116: | Linea 190: | ||
| lsdalton ddyn_rapid.dal H2O.mol | lsdalton ddyn_rapid.dal H2O.mol | ||
| </ | </ | ||
| - | |||
| - | ==== Job LSDalton CPU MPI OpenMP ==== | ||
calcoloscientifico/userguide/dalton.1693578305.txt.gz · Ultima modifica: da fabio.spataro
