| Entrambe le parti precedenti la revisioneRevisione precedenteProssima revisione | Revisione precedente |
| calcoloscientifico:softwareapplicativonew1:bioinf [29/11/2018 12:00] – fausto.pagani | calcoloscientifico:softwareapplicativonew1:bioinf [09/11/2020 16:02] (versione attuale) – fabio.spataro |
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| | Matlab | R2017a | /hpc/share | matlab/R2017a (default) | | | Matlab | R2017a | /hpc/share | matlab/R2017a (default) | |
| | Octave | 3.8.2 | rpm | no | https://www.gnu.org/software/octave/ | | | Octave | 3.8.2 | rpm | no | https://www.gnu.org/software/octave/ | |
| | [[..:priv:cluster:softwareapplicativo:R]] | 3.3.3 | module | gnu R_base/3.3.2 | https://www.r-project.org/ | | | [[..:priv:cluster:softwareapplicativo:R]] | 3.3.3 | module | gnu R_base/3.3.2 | https://www.r-project.org/ | |
| | [[..:priv:cluster:softwareapplicativo: Samtools]] | 1.6 | /hpc/share | |http://www.htslib.org/ | | | [[..:priv:cluster:softwareapplicativo:Samtools]] | 1.6 | /hpc/share | |http://www.htslib.org | |
| | [[..:priv:cluster:softwareapplicativo: Star]] | 2.5.3a | /hpc/share | |https://github.com/alexdobin/STAR | | | [[..:priv:cluster:softwareapplicativo:Star]] | 2.5.3a | /hpc/share | |https://github.com/alexdobin/STAR | |
| | [[..:priv:cluster:softwareapplicativo: Bedtools ]] | 2.25.0 | /hpc/share | | http://bedtools.readthedocs.io/en/latest/ | | | [[..:priv:cluster:softwareapplicativo:Bedtools]] | 2.25.0 | /hpc/share | | http://bedtools.readthedocs.io/en/latest | |
| | [[..:priv:cluster:softwareapplicativo: Bowtie ]] | 1.2.2 | /hpc/share | | http://bowtie-bio.sourceforge.net/index.shtml | | | [[..:priv:cluster:softwareapplicativo:Bowtie]] | 1.2.2 | /hpc/share | | http://bowtie-bio.sourceforge.net/index.shtml | |
| | [[..:priv:cluster:softwareapplicativo: Bowtie2 ]] | 2.3.3.1 | /hpc/share | | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml | | | [[..:priv:cluster:softwareapplicativo:Bowtie2]] | 2.3.3.1 | /hpc/share | | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml | |
| | [[..:priv:cluster:softwareapplicativo: qiime ]] | | virtualenv | | http://qiime.org/ | | | [[..:priv:cluster:softwareapplicativo:qiime]] | | virtualenv | | http://qiime.org | |
| | [[..:priv:cluster:softwareapplicativo: flash ]] | | module | | | | | [[..:priv:cluster:softwareapplicativo:flash]] | | module | | | |
| | [[..:priv:cluster:softwareapplicativo: prinseq ]] | | module | | | | | [[..:priv:cluster:softwareapplicativo:prinseq]] | | module | | | |
| | [[.:priv:cluster:softwareapplicativo: espresso md ]] | | virtualenv | | http://espressomd.org/wordpress/| | | [[..:priv:cluster:softwareapplicativo:espresso md]] | | virtualenv | | http://espressomd.org/wordpress | |
| | [[.:priv:cluster:softwareapplicativo: mpi4py ]] | | rpm ohpc | | | | | [[..:priv:cluster:softwareapplicativo:mpi4py]] | | rpm ohpc | | | |
| | | [[..:priv:cluster:softwareapplicativo:relion]] | 3.0.8 | module | | https://www3.mrc-lmb.cam.ac.uk/relion | |
| | | [[..:priv:cluster:softwareapplicativo:relion]] | 3.1.1 | module | | https://www3.mrc-lmb.cam.ac.uk/relion | |
